2023
Petrucco L*, Lavian H*, Wu Y-K, Svara F, Štih V, Portugues R
Neural dynamics and architecture of the heading direction circuit in zebrafish
Nature Neuroscience 26, 765-773
Dispatch: Fish and fly headed in the same direction, Heinze, Curr Biol 33: PR677-R679, 2023.
2022
Xiao Y, Petrucco L, Hoodless LJ, ,Portugues R, Czopka T
Oligodendrocyte precursor cells sculpt the visual system by regulating axonal remodeling
Odstrcil I, Petkova MD, Haesemeyer M, Boulanger-Weill J, Nikitchenko M, Gagnon JA, Oteiza P, Schalek R, Peleg A, Portugues R,
Lichtman J, Engert F (2022)
Functional and ultrastructural analysis of reafferent mechanosensation in larval zebrafish
2021
Markov DA, Petrucco L, Kist AM, Portugues R (2021)
A cerebellar internal model calibrates a feedback controller involved in sensorimotor control
Engerer P*, Petridou E*, Williams PR, Suzuki SC, Yoshimatsu T, Portugues R, Misgeld T, Godinho L (2021)
Notch-mediated re-specification of neuronal identity during central nervous system development
Claudi F*, Tyson AL*, Petrucco L*, Margrie TW, Portugues R, Branco T (2021)
Visualizing anatomically registered data with Brainrender
Valera G*, Markov DA, Bijari K, Randlett O, Asgharsharghi A, Baudoin J-P, Ascoli GA, Portugues R, López-Schier H (2021)
A neuronal blueprint for directional mechanosensation in larval zebrafish
Jafari M*, Schumacher A-M*, Snaidero N*, Ullrich Gavilanes EM,Neziraj T, Kocsis-Jutka V, Engels D, Jürgens T, Wagner I, Flórez Weidinger JD, Schmidt SS, Beltrán E, Hagan N, Woodworth L, Ofengeim D, Gans J, Wolf F, Kreutzfeldt M, Portugues R, Merkler D#, Misgeld T#, Kerschensteiner M# (2021)
Phagocyte-mediated synapse removal in cortical neuroinflammation is promoted by local calcium accumulation
2020
Claudi F, Petrucco L, Tyson AL, Branco T, Margrie TW, Portugues R (2020)
BrainGlobe Atlas API: a common interface for neuroanatomical atlases
Yildizoglu T, Riegler C, Fitzgerald JE#, Portugues R# (2020)
A neural representation of naturalistic motion-guided behavior in the zebrafish brain
KP Siju, Štih V, Aimon S, Gjorgjieva J, Portugues R, Grunwald Kadow IC (2020)
Valence and state-dependent population coding in dopaminergic neurons in the fly mushroom body
Barykina NV, Sotskov VP, Gruzdeva AM, Wu YK, Portugues R, Subach OM, Chefanova ES, Plusnin VV, Ivashkina OI, Anokhin KV, Vlaskina AV, Korzhenevskiy DA, Nikolaeva AY, Boyko KM, Rakitina TV, Varizhuk AM, Pozmogova GE, Subach FV
FGCaMP7, an improved version of fungi-based ratiometric calcium indicator for in vivo visualization of neuronal activity
Dragomir EI, Štih V, Portugues R (2020)
Evidence accumulation during a sensorimotor decision task revealed by whole-brain imaging
2019
Kist AM, Portugues R (2019)
Optomotor swimming in larval zebrafish Is driven by global whole-field visual motion and local light-dark transitions
Štih V, Petrucco L, Kist AM, Portugues R (2019)
Stytra: An open-source, integrated system for stimulation, tracking and closed-loop behavioral experiments
PLOS Computational Biology, doi:10.1371/journal.pcbi.1006699
Knogler LD, Kist AM, Portugues R (2019)
Motor context dominates output from purkinje cell functional regions during reflexive visuomotor behaviours
2018
Fabritius A, Ng D, Kist AM, Erdogan M, Portugues R, Griesbeck O (2018)
Imaging-based screening platform assists protein engineering
2017
Oteiza P*, Odstrcil I*, Lauder G, Portugues R#, Engert F# (2017)
A novel mechanism for mechanosensory-based rheotaxis in larval zebrafish
Nature 547 27: 445-448, doi:10/1038/nature23014
News & views: “Biomechanics: how fish feel the flow”, Dabiri JO, Nature 547, 406-407, 2017.
Knogler LD, Markov AD, Dragomir EI, Štih V, Portugues R (2017)
Sensorimotor representations in cerebellar granule cells in larval zebrafish are dense, spatially organized, and non-temporally patterned
Curr Biol 27: 1288-1302, doi: 10.1016/j.cub.2017.03.029
Dispatch: “Cerebellar granule cells: dense, rich and evolving representations” , Badura and De Zeeuw, Curr Biol 27: R415-R418, 2017.
Hildebrand DGC, Cicconet M, Torres RM, Choi W, Quan TM, Moon J, Wetzel AW, Champion AS, Graham BJ, Randlett O, Plummer GS, Portugues R, Bianco IH, Saalfeld S, Baden AD, Lillaney K, Burns R, Vogelstein JT, Schier AF, Lee WCA, Jeong WK, Lichtman JW, Engert F (2017)
Whole-brain serial-section electron microscopy in larval zebrafish
Kist AM, Knogler LD, Markov DA, Yildizoglu T, Portugues R (2017)
Whole-brain imaging using genetically encoded activity sensors in vertebrates
2016
Lopes SS, Distel M, Linker C, Fior R, Monteiro R, Bianco IH, Portugues R, Strähle U, Saúde L. (2016)
Report of the 4th European Zebrafish Principal Investigator Meeting
Orger MB, Portugues R.
Correlating whole brain neural activity with behavior in head-fixed larval zebrafish
2015
Randlett O, Wee C, Naumann E, Nnaemeka O, Schoppik D, Fitzgerald J, Portugues R, Lacoste AMB, Riegler C, Engert F, Schier AF.
Whole-brain activity mapping onto a zebrafish brain atlas
Lacoste AMB, Schoppik D, Robson DN, Haesemeyer M, Portugues R, Li JM, Randlett O, Wee CL, Engert F, Schier AF.
A convergent and essential interneuron pathway for Mauthner-cell-mediated escapes
Portugues R*, Haesemeyer M*, Blum ML, Engert F.
Whole-field visual motion drives swimming in larval zebrafish via a stochastic process
Feierstein CE, Portugues R, Orger MB.
Seeing the whole picture: A comprehensive imaging approach to functional mapping of circuits in behaving zebrafish
2014
Rose T, Goltstein PM, Portugues R, Griesbeck O.
Putting a finishing touch on GECIs
Severi KE*, Portugues R*#, Marques JC, O’Malley DM, Orger MB, Engert F#.
Neural control and modulation of swimming speed in the larval zebrafish
Portugues R*, Feierstein CE*, Engert F, Orger MB.
Whole-brain activity maps reveal stereotyped, distributed networks for visuomotor behavior
2013
Portugues R, Severi KE, Wyart C, Ahrens MB.
Optogenetics in a transparent animal: circuit function in the larval zebrafish
2012
Akerboom J, Chen T-W, Wardill TJ, Tian L, Marvin JS, Mutlu S, Calderon NC, Esposti F, Borghuis BG, Sun XR, et al.
Optimization of a GCaMP calcium indicator for neural activity imaging
Ahrens MB, Li JM, Orger MB, Robson DN, Schier AF, Engert F, Portugues R.
Brain-wide neuronal dynamics during motor adaptation in zebrafish
Valente A*, Huang K-H*, Portugues R, Engert F.
Ontogeny of classical and operant learning behaviors in zebrafish
2011
Portugues R, Engert F.
Adaptive locomotor behavior in larval zebrafish
2009
Portugues R, Engert F.
The neural basis of visual behaviors in the larval zebrafish
2001-2009
(authors in alphabetical order)
Portugues, R.
Magnetic monopoles in electromagnetism and gravity
Published in Quantum Mechanics of Fundamental Systems: The Quest for Beauty and Simplicity – Claudio Bunster Festschrift, Henneaux, M; Zanelli, J (Eds.), Springer Verlag 2009.
Edelstein JD, Portugues R.
Gauge/string duality in confining theories
Fortsch Phys 54: 525-579, HEP-TH 0602021 (2006)
Bunster C, Cnockaert S, Henneaux M, Portugues R.
Monopoles for gravitation and for higher spin fields
Phys Rev D73:105014, HEP-TH 0601222 (2006)
Hartnoll SA, Portugues R.
Deforming baryons into confining strings
Phys Rev D70:066007, HEP-TH 0405214 (2004)
Portugues R.
Membrane solitons in eight-dimensional hyperkaehler backgrounds
JHEP 0403:051, HEP-TH 0311099 (2004)
Gursoy U, Hartnoll SA, Portugues R.
The chiral anomaly from M theory
Phys Rev D69:086003, HEP-TH 0311088 (2004)
Portugues R, Townsend PK.
Sigma model soliton intersections from exceptional calibrations
JHEP 0204:039, HEP-TH 0203181 (2002)
Portugues R, Townsend PK.
Intersoliton forces in the Wess-Zumino model
Phys Lett B530:227-234, HEP-TH 0112077 (2002)
Gauntlett JP, Portugues R, Tong D, Townsend PK.
D-brane solitons in supersymmetric sigma models
Phys Rev D63:085002, HEP-TH 0008221 (2001)