Publications
Plastic landmark anchoring in zebrafish compass neurons
Tanaka R, Portugues R
Visual motion and landmark position align with heading direction in the zebrafish interpeduncular nucleus
Lavian H, Prat O, Petrucco L, Štih V, Portugues R.
Algorithmic dissection of optic flow memory in larval zebrafish
Tanaka R, Portugues R.
On analogies in vertebrate and insect visual systems
Tanaka R, Portugues R.
Comparing the representation of a simple visual stimulus across the cerebellar network
Prat O*, Petrucco L*, Štih V, Portugues R.
Structural and Functional Organization of Visual Responses in the Inferior Olive of Larval Zebrafish
Felix R*, Markov DA*, Renninger SL, Tomas AR, Laborde A, Carey MR, Orger MB#, Portugues R#.
The preoptic area and dorsal habenula jointly support homeostatic navigation in larval zebrafish
Palieri V, Paoli E , Wu YK, Haesemeyer M, Grunwald Kadow IC, Portugues R.
The mesencephalic locomotor region recruits V2a reticulospinal neurons to drive forward locomotion in larval zebrafish
Carbo-Cano M, Lapoix M, Xinyu J, Thouvenin O, Pascucci M, Auclair F, Quan FB, Albadri S, Aguda V, Farouj Y, Hillman EMC, Portugues R, Del Bene F, Thiele TR, Dubuc R, Wyart C.
Dimensionality reduction reveals separate translation and rotation populations in the zebrafish hindbrain
Feierstein CE, de Goeij MHM, Ostrovsky AD, Laborde A, Portugues R, Orger MB*, Machens CK*.
Neural dynamics and architecture of the heading direction circuit in zebrafish
Petrucco L*, Lavian H*, Wu Y-K, Svara F, Štih V, Portugues R.
Nature Neuroscience 26, 765-773, 2023.
Dispatch: "Fish and fly headed in the same direction", Heinze, Curr Biol 33: PR677-R679, 2023.
Oligodendrocyte precursor cells sculpt the visual system by regulating axonal remodeling
Xiao Y, Petrucco L, Hoodless LJ, ,Portugues R, Czopka T.
Functional and ultrastructural analysis of reafferent mechanosensation in larval zebrafish
Odstrcil I, Petkova MD, Haesemeyer M, Boulanger-Weill J, Nikitchenko M, Gagnon JA, Oteiza P, Schalek R, Peleg A, Portugues R, Lichtman J, Engert F.
A cerebellar internal model calibrates a feedback controller involved in sensorimotor control
Markov DA, Petrucco L, Kist AM, Portugues R.
Notch-mediated re-specification of neuronal identity during central nervous system development
Engerer P*, Petridou E*, Williams PR, Suzuki SC, Yoshimatsu T, Portugues R, Misgeld T, Godinho L.
Visualizing anatomically registered data with Brainrender
Claudi F*, Tyson AL*, Petrucco L*, Margrie TW, Portugues R, Branco T.
A neuronal blueprint for directional mechanosensation in larval zebrafish
Valera G*, Markov DA, Bijari K, Randlett O, Asgharsharghi A, Baudoin J-P, Ascoli GA, Portugues R, López-Schier H.
Phagocyte-mediated synapse removal in cortical neuroinflammation is promoted by local calcium accumulation
Jafari M*, Schumacher A-M*, Snaidero N*, Ullrich Gavilanes EM,Neziraj T, Kocsis-Jutka V, Engels D, Jürgens T, Wagner I, Flórez Weidinger JD, Schmidt SS, Beltrán E, Hagan N, Woodworth L, Ofengeim D, Gans J, Wolf F, Kreutzfeldt M, Portugues R, Merkler D#, Misgeld T#, Kerschensteiner M#.
BrainGlobe Atlas API: a common interface for neuroanatomical atlases
Claudi F, Petrucco L, Tyson AL, Branco T, Margrie TW, Portugues R.
A neural representation of naturalistic motion-guided behavior in the zebrafish brain
Yildizoglu T, Riegler C, Fitzgerald JE#, Portugues R#.
Current Biology, Volume 30, Issue 12, pages 2321-2333.e6, 2020.
Valence and state-dependent population coding in dopaminergic neurons in the fly mushroom body
KP Siju, Štih V, Aimon S, Gjorgjieva J, Portugues R, Grunwald Kadow IC.
Current Biology, Volume 30, Issue 11, pages 2104-2115.e4, 2020.
FGCaMP7, an improved version of fungi-based ratiometric calcium indicator for in vivo visualization of neuronal activity
Barykina NV, Sotskov VP, Gruzdeva AM, Wu YK, Portugues R, Subach OM, Chefanova ES, Plusnin VV, Ivashkina OI, Anokhin KV, Vlaskina AV, Korzhenevskiy DA, Nikolaeva AY, Boyko KM, Rakitina TV, Varizhuk AM, Pozmogova GE, Subach FV.
Evidence accumulation during a sensorimotor decision task revealed by whole-brain imaging
Dragomir EI, Štih V, Portugues R.
Optomotor swimming in larval zebrafish Is driven by global whole-field visual motion and local light-dark transitions
Kist AM, Portugues R.
Stytra: An open-source, integrated system for stimulation, tracking and closed-loop behavioral experiments
Štih V, Petrucco L, Kist AM, Portugues R.
Motor context dominates output from purkinje cell functional regions during reflexive visuomotor behaviours
Knogler LD, Kist AM, Portugues R.
Imaging-based screening platform assists protein engineering
Fabritius A, Ng D, Kist AM, Erdogan M, Portugues R, Griesbeck O.
Cell Chemical Biology, doi:10.1016/j.chembiol.2018.08.008, 2018.
A novel mechanism for mechanosensory-based rheotaxis in larval zebrafish
Oteiza P*, Odstrcil I*, Lauder G, Portugues R#, Engert F#.
Nature 547 27: 445-448, doi:10/1038/nature23014, 2017.
News & views: “Biomechanics: how fish feel the flow”, Dabiri JO, Nature 547, 406-407, 2017.
Sensorimotor representations in cerebellar granule cells in larval zebrafish are dense, spatially organized, and non-temporally patterned
Knogler LD, Markov AD, Dragomir EI, Štih V, Portugues R.
Whole-brain serial-section electron microscopy in larval zebrafish
Hildebrand DGC, Cicconet M, Torres RM, Choi W, Quan TM, Moon J, Wetzel AW, Champion AS, Graham BJ, Randlett O, Plummer GS, Portugues R, Bianco IH, Saalfeld S, Baden AD, Lillaney K, Burns R, Vogelstein JT, Schier AF, Lee WCA, Jeong WK, Lichtman JW, Engert F.
Whole-brain imaging using genetically encoded activity sensors in vertebrates
Kist AM, Knogler LD, Markov DA, Yildizoglu T, Portugues R.
Decoding neural circuit structure and function, Springer, 2017.
Report of the 4th European Zebrafish Principal Investigator Meeting
Lopes SS, Distel M, Linker C, Fior R, Monteiro R, Bianco IH, Portugues R, Strähle U, Saúde L.
Correlating whole brain neural activity with behavior in head-fixed larval zebrafish
Orger MB, Portugues R.
Whole-brain activity mapping onto a zebrafish brain atlas
Randlett O, Wee C, Naumann E, Nnaemeka O, Schoppik D, Fitzgerald J, Portugues R, Lacoste AMB, Riegler C, Engert F, Schier AF.
A convergent and essential interneuron pathway for Mauthner-cell-mediated escapes
Lacoste AMB, Schoppik D, Robson DN, Haesemeyer M, Portugues R, Li JM, Randlett O, Wee CL, Engert F, Schier AF.
Whole-field visual motion drives swimming in larval zebrafish via a stochastic process
Portugues R*, Haesemeyer M*, Blum ML, Engert F.
Seeing the whole picture: A comprehensive imaging approach to functional mapping of circuits in behaving zebrafish
Feierstein CE, Portugues R, Orger MB.
Putting a finishing touch on GECIs
Rose T, Goltstein PM, Portugues R, Griesbeck O.
Neural control and modulation of swimming speed in the larval zebrafish
Severi KE*, Portugues R*#, Marques JC, O’Malley DM, Orger MB, Engert F#.
Whole-brain activity maps reveal stereotyped, distributed networks for visuomotor behavior
Portugues R*, Feierstein CE*, Engert F, Orger MB.
Optogenetics in a transparent animal: circuit function in the larval zebrafish
Portugues R, Severi KE, Wyart C, Ahrens MB.
Optimization of a GCaMP calcium indicator for neural activity imaging
Akerboom J, Chen T-W, Wardill TJ, Tian L, Marvin JS, Mutlu S, Calderon NC, Esposti F, Borghuis BG, Sun XR, et al.
Brain-wide neuronal dynamics during motor adaptation in zebrafish
Ahrens MB, Li JM, Orger MB, Robson DN, Schier AF, Engert F, Portugues R.
Ontogeny of classical and operant learning behaviors in zebrafish
Valente A*, Huang K-H*, Portugues R, Engert F.
Adaptive locomotor behavior in larval zebrafish
Portugues R, Engert F.
The neural basis of visual behaviors in the larval zebrafish
Portugues R, Engert F.
Magnetic monopoles in electromagnetism and gravity
Portugues R.
Gauge/string duality in confining theories
Edelstein JD, Portugues R.
Monopoles for gravitation and for higher spin fields
Bunster C, Cnockaert S, Henneaux M, Portugues R.
Deforming baryons into confining strings
Hartnoll SA, Portugues R.
Membrane solitons in eight-dimensional hyperkaehler backgrounds
Portugues R.
The chiral anomaly from M theory
Gursoy U, Hartnoll SA, Portugues R.
Sigma model soliton intersections from exceptional calibrations
Portugues R, Townsend PK.
Intersoliton forces in the Wess-Zumino model
Portugues R, Townsend PK.
D-brane solitons in supersymmetric sigma models
Gauntlett JP, Portugues R, Tong D, Townsend PK.